A simple bioinformatics tool for visualization of genomic signal tracks in user-defined genomic windows, either arbitrary selected by genomic coordinates or anchored to particular transcripts or genes, read more.
Transcription Factor Motif Location Toolbox is an interactive web application to scan DNA sequences for transcription factor binding sites (TFBS) with position weight matrices presented in HOCOMOCO model collection, see in action.
ChIPMunk is a fast heuristic DNA motif digger based a on greedy approach accompanied by bootstrapping. Now classic and dinucleotide versions come in a single updated package, read more.
Straightforward yet Powerful Rapid SuperAlphabet Representation Utilized for motif Search is as practical command-line ChIPMunk companion
intended for motif finding with mono- and dinucleotide position weight matrices, read more.