1. svist4get logo

    svist4get: visualization of genomic signal tracks

    A simple bioinformatics tool for visualization of genomic signal tracks in user-defined genomic windows, either arbitrary selected by genomic coordinates or anchored to particular transcripts or genes, read more.

  2. MoLoTool logo

    MoLoTool: interactive motif finding

    Transcription Factor Motif Location Toolbox is an interactive web application to scan DNA sequences for transcription factor binding sites (TFBS) with position weight matrices presented in HOCOMOCO model collection, see in action.

  3. new ChIPMunk logo

    ChIPMunk: motif discovery

    ChIPMunk is a fast heuristic DNA motif digger based a on greedy approach accompanied by bootstrapping. Now classic and dinucleotide versions come in a single updated package, read more.

  4. PERFECTOS-APE logo

    MACRO-PERFECTOS-APE: motif analysis

    MAtrix CompaRisOn and PrEdicting Regulatory Functional Effect by Approximate P-value Estimation toolbox allows estimating motif P-values, comparing PWMs using natural Jaccard similarity measure and motif-based analysis of regulatory SNVs for mono- and dinucleotide PWMs, read more here and there.

  5. SPRY-SARUS logo

    SPRY-SARUS: command-line motif finding

    Straightforward yet Powerful Rapid SuperAlphabet Representation Utilized for motif Search is as practical command-line ChIPMunk companion
    intended for motif finding with mono- and dinucleotide position weight matrices, read more.

External links

Github