back RXRG_f1 HOCOMOCO-build9-MAR2012


UniProt RXRG
motif weight653.00413
total sequences1502
data sources PARALLELSELEX:1491
TRANSFAC20112:11
motif logo
consensusbGTCAAAGGTCAh
small-BiSMarkhg19 PWM
small-BiSMarkuniform PWM
thresholdshg19 PWM
thresholdsuniform PWM
WPCM
     A          C          G          T    
  102.0402   102.4647     345.61   102.8892 
     0.849     0.4245   571.6391    80.0916 
    4.0687      9.379    50.4667   589.0898 
    3.8204   583.7648    13.1787    52.2402 
  653.0041        0.0        0.0        0.0 
  594.1662     2.6191    47.9448     8.2741 
  633.2229      0.849    18.9322        0.0 
       0.0     0.4245   651.7307      0.849 
    0.4245     0.4245   596.1442    56.0109 
    9.1952    11.5014    15.8108   616.4967 
    2.9714   561.3825    49.4638    39.1864 
   605.969     3.6442    42.7181     0.6728 
  190.5637   215.2555    67.0425   180.1424 
PPM
     A          C          G          T    
    0.1563     0.1569     0.5293     0.1576 
    0.0013     0.0007     0.8754     0.1227 
    0.0062     0.0144     0.0773     0.9021 
    0.0059      0.894     0.0202       0.08 
       1.0        0.0        0.0        0.0 
    0.9099      0.004     0.0734     0.0127 
    0.9697     0.0013      0.029        0.0 
       0.0     0.0007      0.998     0.0013 
    0.0007     0.0007     0.9129     0.0858 
    0.0141     0.0176     0.0242     0.9441 
    0.0046     0.8597     0.0757       0.06 
     0.928     0.0056     0.0654      0.001 
    0.2918     0.3296     0.1027     0.2759 
PWM uniform
     A          C          G          T    
    -0.464      -0.46     0.7448    -0.4559 
   -4.2012    -4.3898     1.2462     -0.702 
   -3.3666    -2.7073    -1.1522     1.2762 
   -3.4112     1.2671    -2.4106    -1.1188 
    1.3789    -4.6225    -4.6225    -4.6225 
    1.2847    -3.6607    -1.2019    -2.8132 
    1.3482    -4.2012    -2.0822    -4.6225 
   -4.6225    -4.3898     1.3769    -4.2012 
   -4.3898    -4.3898      1.288    -1.0511 
   -2.7242    -2.5309    -2.2469     1.3215 
   -3.5809     1.2281    -1.1717    -1.3963 
    1.3043    -3.4442    -1.3133    -4.2752 
    0.1533     0.2742     -0.876     0.0975 
PWM hg19
     A          C          G          T    
   -0.6161    -0.2795     0.9271     -0.608 
   -4.2517     -4.349     1.4287    -0.8533 
   -3.4747    -2.5492    -0.9744      1.122 
   -3.5173     1.4497     -2.246    -1.2684 
    1.2246    -4.6225    -4.6225    -4.6225 
    1.1305    -3.5438    -1.0243    -2.9408 
     1.194    -4.1344    -1.9124    -4.6225 
   -4.6225     -4.349     1.5596    -4.2517 
     -4.42     -4.349     1.4706    -1.2011 
   -2.8541    -2.3687    -2.0795     1.1673 
   -3.6782     1.4107     -0.994    -1.5444 
    1.1501     -3.314    -1.1364    -4.3182 
       0.0     0.4559    -0.6969    -0.0556