back RARA_f2 HOCOMOCO-build9-MAR2012


UniProt RARA
motif weight121.0
total sequences130
data sources JASPAR:23
TRANSFAC20112:107
motif logo
consensusRGKTSAnvvdvRSKKSR
small-BiSMarkhg19 PWM
small-BiSMarkuniform PWM
thresholdshg19 PWM
thresholdsuniform PWM
WPCM
     A          C          G          T    
   67.7808     1.9706    46.5946      4.654 
       0.0     0.4193   119.0713     1.5094 
    5.9244      3.522    77.6045    33.9491 
    5.7022     0.8386     9.9495   104.5097 
    0.7547    88.7783    21.9661     9.5009 
  106.1868        0.0    13.3038     1.5094 
   27.4712    36.9428    26.0163    30.5697 
    20.985    46.1376    39.7351    14.1423 
   33.5634    23.0269    48.2298      16.18 
   53.6217    12.2136    38.7037    16.4609 
   29.7898    30.2636    52.2255      8.721 
   71.7849    15.9284    21.7984    11.4883 
    8.7755    13.5553    93.8348     4.8343 
   12.0753     6.5953    73.1559    29.1735 
   16.8802    13.2199    17.6056    73.2943 
   11.8992    84.2166     16.201     8.6833 
   87.7259    10.1047    13.8488     9.3206 
PPM
     A          C          G          T    
    0.5602     0.0163     0.3851     0.0385 
       0.0     0.0035     0.9841     0.0125 
     0.049     0.0291     0.6414     0.2806 
    0.0471     0.0069     0.0822     0.8637 
    0.0062     0.7337     0.1815     0.0785 
    0.8776        0.0     0.1099     0.0125 
     0.227     0.3053      0.215     0.2526 
    0.1734     0.3813     0.3284     0.1169 
    0.2774     0.1903     0.3986     0.1337 
    0.4432     0.1009     0.3199      0.136 
    0.2462     0.2501     0.4316     0.0721 
    0.5933     0.1316     0.1802     0.0949 
    0.0725      0.112     0.7755       0.04 
    0.0998     0.0545     0.6046     0.2411 
    0.1395     0.1093     0.1455     0.6057 
    0.0983      0.696     0.1339     0.0718 
     0.725     0.0835     0.1145      0.077 
PWM uniform
     A          C          G          T    
    0.7854    -2.2948     0.4185    -1.6814 
   -3.2669     -2.967     1.3414     -2.452 
    -1.485    -1.8964     0.9186     0.1112 
   -1.5167    -2.7366    -1.0371     1.2123 
   -2.7787     1.0512    -0.3057    -1.0781 
    1.2281    -3.2669     -0.774     -2.452 
   -0.0925     0.1929    -0.1446     0.0101 
    -0.349     0.4089     0.2636    -0.7178 
    0.1002    -0.2609     0.4522    -0.5931 
    0.5557    -0.8522     0.2381    -0.5771 
   -0.0147     0.0004     0.5299    -1.1538 
    0.8419    -0.6077     -0.313    -0.9078 
   -1.1483    -0.7568     1.1059    -1.6511 
   -0.8625     -1.395     0.8605    -0.0348 
   -0.5536    -0.7798    -0.5143     0.8623 
   -0.8759     0.9992    -0.5919    -1.1576 
    1.0394    -1.0232    -0.7371    -1.0951 
PWM hg19
     A          C          G          T    
    0.6337    -2.1771     0.5974    -1.8024 
   -3.2669    -2.9163     1.5227    -2.5353 
   -1.6119    -1.7567     1.0991    -0.0378 
   -1.6427    -2.6572    -0.8722     1.0596 
   -2.8356      1.232    -0.1314    -1.2142 
    1.0753    -3.2669    -0.6049    -2.5353 
   -0.2402     0.3707     0.0311    -0.1383 
   -0.4947     0.5877     0.4417    -0.8595 
   -0.0487    -0.0862     0.6311    -0.7363 
    0.4047    -0.6842     0.4161    -0.7204 
   -0.1629     0.1771     0.7092    -1.2885 
      0.69    -0.4364    -0.1387    -1.0467 
   -1.2831    -0.5875     1.2868     -1.773 
   -1.0022     -1.238     1.0408    -0.1829 
   -0.6972    -0.6108     -0.342     0.7104 
   -1.0154     1.1798    -0.4205    -1.2922 
     0.887    -0.8581    -0.5675    -1.2309