back KAISO_f1 HOCOMOCO-build9-MAR2012


UniProt KAISO
motif weight2010.4522
total sequences2077
data sources HUDSONALPHACHIPSEQV2:2000
METHBP:32,6
TRANSFAC20112:40
motif logo
consensushTvGCARGAddn
small-BiSMarkhg19 PWM
small-BiSMarkuniform PWM
thresholdshg19 PWM
thresholdsuniform PWM
WPCM
     A          C          G          T    
  257.6625     900.79   211.6509   640.3488 
    4.5991     1.4119    19.7279  1984.7133 
  295.4297  1059.2239   564.3443    91.4543 
   25.1736    37.6796  1947.3997     0.1993 
    3.9283  1995.3332    10.4772     0.7135 
 1247.6464     3.7517   759.0542        0.0 
  621.3545        0.0  1347.0355    42.0622 
   11.9832     7.0882  1776.9768   214.4041 
 1794.5624   213.6065     1.1294     1.1539 
  823.6178   111.4704   689.6814   385.6826 
  361.0116   242.0765   834.0629   573.3012 
  732.6907   379.0101   357.6547   541.0967 
PPM
     A          C          G          T    
    0.1282     0.4481     0.1053     0.3185 
    0.0023     0.0007     0.0098     0.9872 
    0.1469     0.5269     0.2807     0.0455 
    0.0125     0.0187     0.9686     0.0001 
     0.002     0.9925     0.0052     0.0004 
    0.6206     0.0019     0.3776        0.0 
    0.3091        0.0       0.67     0.0209 
     0.006     0.0035     0.8839     0.1066 
    0.8926     0.1062     0.0006     0.0006 
    0.4097     0.0554      0.343     0.1918 
    0.1796     0.1204     0.4149     0.2852 
    0.3644     0.1885     0.1779     0.2691 
PWM uniform
     A          C          G          T    
   -0.6646     0.5818    -0.8597     0.2414 
   -4.3517    -5.0256    -3.1495     1.3706 
   -0.5288     0.7435     0.1154    -1.6872 
    -2.925    -2.5452     1.3516    -5.4813 
   -4.4606     1.3759    -3.7076    -5.2623 
    0.9069    -4.4914      0.411    -5.5809 
    0.2114    -5.5809     0.9835    -2.4402 
   -3.5928    -4.0275     1.2601    -0.8469 
      1.27    -0.8506    -5.1147    -5.1067 
    0.4924    -1.4929     0.3154    -0.2637 
   -0.3294    -0.7265      0.505     0.1311 
    0.3757     -0.281    -0.3387     0.0735 
PWM hg19
     A          C          G          T    
    -0.818     0.7645    -0.6782     0.0872 
   -4.4586    -4.9435    -2.9813     1.2161 
   -0.6823     0.9262     0.2979    -1.8384 
    -3.068    -2.3703     1.5345     -5.495 
   -4.5621     1.5588    -3.5506    -5.3022 
    0.7525    -4.3662     0.5936    -5.5809 
    0.0572    -5.5809     1.1663    -2.5877 
   -3.7248    -3.8805      1.443    -1.0001 
    1.1155     -0.669    -5.0426    -5.1623 
    0.3381    -1.3127      0.498    -0.4175 
   -0.4832    -0.5448     0.6876     -0.023 
    0.2215    -0.0988    -0.1566    -0.0806