| UniProt |
HXB8
|
| motif weight | 26.4 |
| total sequences | 31 |
| data sources |
TRANSFAC20112:31
|
| motif logo |
|
| consensus | TTGATTRATKv |
| small-BiSMark | hg19 PWM |
| small-BiSMark | uniform PWM |
| thresholds | hg19 PWM |
| thresholds | uniform PWM |
| WPCM | A C G T
5.225 0.225 0.225 20.725
0.0 1.0 0.0 25.4
2.0 0.0 24.4 0.0
26.4 0.0 0.0 0.0
0.0 0.0 0.0 26.4
0.0 0.0 0.0 26.4
14.7 0.0 6.7 5.0
26.4 0.0 0.0 0.0
1.0 0.0 0.0 25.4
2.7 1.8 13.7 8.2
7.7 9.6 6.4 2.7
|
| PPM | A C G T
0.1979 0.0085 0.0085 0.785
0.0 0.0379 0.0 0.9621
0.0758 0.0 0.9242 0.0
1.0 0.0 0.0 0.0
0.0 0.0 0.0 1.0
0.0 0.0 0.0 1.0
0.5568 0.0 0.2538 0.1894
1.0 0.0 0.0 0.0
0.0379 0.0 0.0 0.9621
0.1023 0.0682 0.5189 0.3106
0.2917 0.3636 0.2424 0.1023
|
| PWM uniform | A C G T
-0.205 -1.9615 -1.9615 1.0661
-2.2044 -1.406 -2.2044 1.2625
-0.9678 -2.2044 1.2236 -2.2044
1.2999 -2.2044 -2.2044 -2.2044
-2.2044 -2.2044 -2.2044 1.2999
-2.2044 -2.2044 -2.2044 1.2999
0.7381 -2.2044 0.0134 -0.2429
1.2999 -2.2044 -2.2044 -2.2044
-1.406 -2.2044 -2.2044 1.2625
-0.746 -1.0414 0.6715 0.1953
0.1383 0.3396 -0.0273 -0.746
|
| PWM hg19 | A C G T
-0.3373 -1.9191 -1.9191 0.9178
-2.2044 -1.3013 -2.2044 1.1131
-1.075 -2.2044 1.4012 -2.2044
1.1503 -2.2044 -2.2044 -2.2044
-2.2044 -2.2044 -2.2044 1.1503
-2.2044 -2.2044 -2.2044 1.1503
0.5922 -2.2044 0.1781 -0.3743
1.1503 -2.2044 -2.2044 -2.2044
-1.4881 -2.2044 -2.2044 1.1131
-0.8625 -0.9121 0.845 0.0557
-0.0005 0.5094 0.1366 -0.8625
|
