back HXB6_f1 HOCOMOCO-build9-MAR2012


UniProt HXB6
motif weight7.0
total sequences7
data sources TEXTMINE:1
TRANSFAC20112:6
motif logo
consensusdWTGATTKATGCn
small-BiSMarkhg19 PWM
small-BiSMarkuniform PWM
thresholdshg19 PWM
thresholdsuniform PWM
WPCM
     A          C          G          T    
    3.3166     0.6335     1.5719     1.4781 
    3.4723     0.8446        0.0     2.6831 
       0.0     0.8446        0.0     6.1554 
    0.8446        0.0     6.1554        0.0 
       7.0        0.0        0.0        0.0 
       0.0        0.0        0.0        7.0 
       0.0        0.0        0.0        7.0 
    0.8446        0.0     3.5277     2.6276 
    6.1554        0.0     0.8446        0.0 
       0.0        0.0        0.0        7.0 
       0.0        0.0     6.1554     0.8446 
    3.4723     3.5277        0.0        0.0 
    3.5277      1.783     0.8446     0.8446 
PPM
     A          C          G          T    
    0.4738     0.0905     0.2246     0.2112 
     0.496     0.1207        0.0     0.3833 
       0.0     0.1207        0.0     0.8793 
    0.1207        0.0     0.8793        0.0 
       1.0        0.0        0.0        0.0 
       0.0        0.0        0.0        1.0 
       0.0        0.0        0.0        1.0 
    0.1207        0.0      0.504     0.3754 
    0.8793        0.0     0.1207        0.0 
       0.0        0.0        0.0        1.0 
       0.0        0.0     0.8793     0.1207 
     0.496      0.504        0.0        0.0 
     0.504     0.2547     0.1207     0.1207 
PWM uniform
     A          C          G          T    
    0.5309    -0.6916     -0.083    -0.1296 
     0.571    -0.5189    -1.5255     0.3487 
   -1.5255    -0.5189    -1.5255     1.0885 
   -0.5189    -1.5255     1.0885    -1.5255 
    1.2082    -1.5255    -1.5255    -1.5255 
   -1.5255    -1.5255    -1.5255     1.2082 
   -1.5255    -1.5255    -1.5255     1.2082 
   -0.5189    -1.5255     0.5849      0.331 
    1.0885    -1.5255    -0.5189    -1.5255 
   -1.5255    -1.5255    -1.5255     1.2082 
   -1.5255    -1.5255     1.0885    -0.5189 
     0.571     0.5849    -1.5255    -1.5255 
    0.5849     0.0147    -0.5189    -0.5189 
PWM hg19
     A          C          G          T    
    0.3974     -0.584     0.0597    -0.2437 
    0.4367     -0.399    -1.5255     0.2194 
   -1.5255     -0.399    -1.5255      0.946 
   -0.6142    -1.5255     1.2592    -1.5255 
    1.0643    -1.5255    -1.5255    -1.5255 
   -1.5255    -1.5255    -1.5255     1.0643 
   -1.5255    -1.5255    -1.5255     1.0643 
   -0.6142    -1.5255     0.7475     0.2022 
     0.946    -1.5255     -0.399    -1.5255 
   -1.5255    -1.5255    -1.5255     1.0643 
   -1.5255    -1.5255     1.2592    -0.6142 
    0.4367     0.7475    -1.5255    -1.5255 
    0.4503     0.1612     -0.399    -0.6142