back BRCA1_f1 HOCOMOCO-build9-MAR2012


UniProt BRCA1
motif weight72.57041
total sequences96
data sources JASPAR:43
TRANSFAC20112:53
motif logo
consensusbKKbKGTTG
small-BiSMarkhg19 PWM
small-BiSMarkuniform PWM
thresholdshg19 PWM
thresholdsuniform PWM
WPCM
     A          C          G          T    
   10.4529    14.3109    21.0795     26.727 
   13.7504        0.0    19.9927    38.8274 
    2.0343     9.0845    11.1187     50.333 
    4.0685    25.0086    34.9694     8.5239 
    2.0343     10.874    32.7246    26.9376 
       0.0        0.0    63.1702     9.4003 
       0.0     2.0343        0.0    70.5361 
       0.0        0.0        0.0    72.5704 
    4.5771      5.314    60.1365     2.5428 
PPM
     A          C          G          T    
     0.144     0.1972     0.2905     0.3683 
    0.1895        0.0     0.2755      0.535 
     0.028     0.1252     0.1532     0.6936 
    0.0561     0.3446     0.4819     0.1175 
     0.028     0.1498     0.4509     0.3712 
       0.0        0.0     0.8705     0.1295 
       0.0      0.028        0.0      0.972 
       0.0        0.0        0.0        1.0 
    0.0631     0.0732     0.8287      0.035 
PWM uniform
     A          C          G          T    
   -0.5112    -0.2224     0.1422     0.3693 
   -0.2595    -2.8869     0.0919     0.7307 
   -1.8225    -0.6376     -0.455     0.9841 
   -1.3186     0.3055      0.629    -0.6944 
   -1.8225    -0.4753     0.5647     0.3769 
   -2.8869    -2.8869      1.207     -0.607 
   -2.8869    -1.8225    -2.8869     1.3156 
   -2.8869    -2.8869    -2.8869     1.3436 
   -1.2243    -1.1017     1.1586    -1.6708 
PWM hg19
     A          C          G          T    
   -0.6504    -0.0511     0.3172     0.2211 
   -0.4022    -2.8869     0.2664     0.5805 
   -1.9211    -0.4724    -0.2868     0.8329 
    -1.439     0.4817     0.8071    -0.8305 
   -1.9211    -0.3074     0.7424     0.2286 
   -2.8869    -2.8869     1.3873    -0.7447 
   -2.8869    -1.6989    -2.8869     1.1634 
   -2.8869    -2.8869    -2.8869     1.1914 
   -1.3477    -0.9471     1.3388    -1.7771