back BRAC_si HOCOMOCO-build9-MAR2012


UniProt BRAC
motif weight26.0
total sequences40
data sources JASPAR:40
motif logo
consensusvSAWARTSACACCTAGGTGTSAAAW
small-BiSMarkhg19 PWM
small-BiSMarkuniform PWM
thresholdshg19 PWM
thresholdsuniform PWM
WPCM
     A          C          G          T    
     12.75       2.75       8.75       1.75 
       4.0       13.0        8.0        1.0 
      21.0        1.0        1.0        3.0 
       9.0        1.0        1.0       15.0 
      15.0        0.0        0.0       11.0 
       8.0        0.0       17.0        1.0 
       0.0        0.0        0.0       26.0 
       3.0        5.0       18.0        0.0 
      26.0        0.0        0.0        0.0 
       0.0       26.0        0.0        0.0 
      26.0        0.0        0.0        0.0 
       0.0       25.0        0.0        1.0 
       0.0       24.0        1.0        1.0 
       0.0        0.0        0.0       26.0 
      26.0        0.0        0.0        0.0 
       0.0        2.0       24.0        0.0 
       0.0        1.0       25.0        0.0 
       0.0        1.0        0.0       25.0 
       0.0        0.0       26.0        0.0 
       1.0        1.0        0.0       24.0 
       0.0        7.0       17.0        2.0 
      25.0        0.0        0.0        1.0 
      22.0        2.0        1.0        1.0 
      22.0        0.0        3.0        1.0 
       6.5        2.5        2.5       14.5 
PPM
     A          C          G          T    
    0.4904     0.1058     0.3365     0.0673 
    0.1538        0.5     0.3077     0.0385 
    0.8077     0.0385     0.0385     0.1154 
    0.3462     0.0385     0.0385     0.5769 
    0.5769        0.0        0.0     0.4231 
    0.3077        0.0     0.6538     0.0385 
       0.0        0.0        0.0        1.0 
    0.1154     0.1923     0.6923        0.0 
       1.0        0.0        0.0        0.0 
       0.0        1.0        0.0        0.0 
       1.0        0.0        0.0        0.0 
       0.0     0.9615        0.0     0.0385 
       0.0     0.9231     0.0385     0.0385 
       0.0        0.0        0.0        1.0 
       1.0        0.0        0.0        0.0 
       0.0     0.0769     0.9231        0.0 
       0.0     0.0385     0.9615        0.0 
       0.0     0.0385        0.0     0.9615 
       0.0        0.0        1.0        0.0 
    0.0385     0.0385        0.0     0.9231 
       0.0     0.2692     0.6538     0.0769 
    0.9615        0.0        0.0     0.0385 
    0.8462     0.0769     0.0385     0.0385 
    0.8462        0.0     0.1154     0.0385 
      0.25     0.0962     0.0962     0.5577 
PWM uniform
     A          C          G          T    
    0.6176    -0.7188     0.2682    -1.0481 
   -0.4182     0.6359     0.1865     -1.394 
    1.0927     -1.394     -1.394     -0.651 
     0.294     -1.394     -1.394     0.7711 
    0.7711     -2.195     -2.195     0.4795 
    0.1865     -2.195     0.8902     -1.394 
    -2.195     -2.195     -2.195     1.2991 
    -0.651    -0.2295     0.9448     -2.195 
    1.2991     -2.195     -2.195     -2.195 
    -2.195     1.2991     -2.195     -2.195 
    1.2991     -2.195     -2.195     -2.195 
    -2.195     1.2611     -2.195     -1.394 
    -2.195     1.2216     -1.394     -1.394 
    -2.195     -2.195     -2.195     1.2991 
    1.2991     -2.195     -2.195     -2.195 
    -2.195    -0.9551     1.2216     -2.195 
    -2.195     -1.394     1.2611     -2.195 
    -2.195     -1.394     -2.195     1.2611 
    -2.195     -2.195     1.2991     -2.195 
    -1.394     -1.394     -2.195     1.2216 
    -2.195     0.0661     0.8902    -0.9551 
    1.2611     -2.195     -2.195     -1.394 
    1.1375    -0.9551     -1.394     -1.394 
    1.1375     -2.195     -0.651     -1.394 
       0.0    -0.7915    -0.7915     0.7389 
PWM hg19
     A          C          G          T    
    0.4729    -0.5748     0.4369     -1.151 
    -0.545      0.809      0.354    -1.4763 
    0.9443    -1.2891    -1.2891    -0.7706 
    0.1531    -1.2891    -1.2891      0.625 
     0.625     -2.195     -2.195     0.3363 
    0.0472     -2.195     1.0655    -1.4763 
    -2.195     -2.195     -2.195     1.1495 
   -0.7706    -0.0702     1.1205     -2.195 
    1.1495     -2.195     -2.195     -2.195 
    -2.195      1.477     -2.195     -2.195 
    1.1495     -2.195     -2.195     -2.195 
    -2.195     1.4388     -2.195    -1.4763 
    -2.195     1.3991    -1.2891    -1.4763 
    -2.195     -2.195     -2.195     1.1495 
    1.1495     -2.195     -2.195     -2.195 
    -2.195    -0.8216     1.3991     -2.195 
    -2.195    -1.2891     1.4388     -2.195 
    -2.195    -1.2891     -2.195     1.1117 
    -2.195     -2.195      1.477     -2.195 
   -1.4763    -1.2891     -2.195     1.0724 
    -2.195     0.2316     1.0655    -1.0625 
    1.1117     -2.195     -2.195    -1.4763 
    0.9888    -0.8216    -1.2891    -1.4763 
    0.9888     -2.195    -0.5044    -1.4763 
   -0.1362    -0.6505    -0.6505     0.5931