The sampler was looking for sites on both strands of 12 sequences of length from 212 through 244.
The site length found is 9.
The sampler has tested the lengths in [6,9].
The motif is spaced at [4,4]..
The motif is formed by 12 motif sites.
All the positions are 0-based.
The description of sitesGene Id | Position | Length | Score | Direction | Site in sequence | | Site-as-in-motif |
1 | 113 | 9 | 9.579 | > | TAATcAAAA | | TAATcAAAA |
10 | 109 | 9 | 9.741 | > | AAATaTTAA | | AAATaTTAA |
11 | 107 | 9 | 11.36 | > | TAATaATAA | | TAATaATAA |
12 | 116 | 9 | 10.94 | > | TAATtTTAA | | TAATtTTAA |
2 | 109 | 9 | 10.94 | > | TAATaTTAA | | TAATaTTAA |
3 | 102 | 9 | 7.496 | > | AACTcATAA | | AACTcATAA |
4 | 107 | 9 | 5.867 | > | TCATtTCAA | | TCATtTCAA |
5 | 109 | 9 | 11.36 | < | TTATgATTA | | TAATcATAA |
6 | 110 | 9 | 7.656 | < | TGTTtATTA | | TAATaAACA |
7 | 100 | 9 | 11.36 | > | TAATgATAA | | TAATgATAA |
8 | 100 | 9 | 7.191 | < | TGATaATTG | | CAATtATCA |
9 | 110 | 9 | 9.741 | > | AAATcTTAA | | AAATcTTAA |
The list of sites
1 TAAT.AAAA
10 AAAT.TTAA
11 TAAT.ATAA
12 TAAT.TTAA
2 TAAT.TTAA
3 AACT.ATAA
4 TCAT.TCAA
5 TAAT.ATAA
6 TAAT.AACA
7 TAAT.ATAA
8 CAAT.ATCA
9 AAAT.TTAA