The sampler was looking for sites on both strands of 33 sequences of length from 224 through 261.
The site length found is 13.
The sampler has tested the lengths in [6,19].
The motif is formed by 33 motif sites.
All the positions are 0-based.
The description of sitesGene Id | Position | Length | Score | Direction | Site in sequence | | Site-as-in-motif |
1 | 110 | 13 | 10.72 | > | aaAAcTaGAtCaG | | aaAAcTaGAtCaG |
10 | 128 | 13 | 11.72 | < | TtGtTCtAaTTat | | atAAtTaGAaCaA |
11 | 104 | 13 | 6.975 | < | CtGtTTtCtTTtt | | aaAAaGaAAaCaG |
12 | 108 | 13 | 8.321 | > | agAAgTgGAcCcA | | agAAgTgGAcCcA |
13 | 110 | 13 | 10.78 | < | TtGtTGcAaTTtt | | aaAAtTgCAaCaA |
14 | 107 | 13 | 5.522 | > | caATcTgGAcTaG | | caATcTgGAcTaG |
15 | 105 | 13 | 4.793 | > | atAAtGaGGgCtA | | atAAtGaGGgCtA |
16 | 104 | 13 | 4.712 | < | TcTaTCaAgATta | | taATcTtGAtAgA |
17 | 101 | 13 | 4.949 | > | acAAcTgGCcAgA | | acAAcTgGCcAgA |
18 | 107 | 13 | 4.199 | > | aaACcTaAAaAcC | | aaACcTaAAaAcC |
19 | 107 | 13 | 5.841 | > | aaTAcTcGAaAaA | | aaTAcTcGAaAaA |
2 | 112 | 13 | 6.679 | < | GtGcTCtCtTTac | | gtAAaGaGAgCaC |
20 | 103 | 13 | 9.755 | > | taAAcTgGAgTaA | | taAAcTgGAgTaA |
21 | 106 | 13 | 8.576 | < | TtGcTCtAcTTaa | | ttAAgTaGAgCaA |
22 | 107 | 13 | 9.304 | > | ggATcTgGAaCgA | | ggATcTgGAaCgA |
23 | 107 | 13 | 5.974 | > | cgAAcTaGGtCaC | | cgAAcTaGGtCaC |
24 | 105 | 13 | 10.1 | > | aaAAgTaGAgCgC | | aaAAgTaGAgCgC |
25 | 107 | 13 | 4.576 | < | GgAtCGcAgTTtt | | aaAAcTgCGaTcC |
26 | 118 | 13 | 4.848 | < | TcCgTCcGtTTtt | | aaAAaCgGAcGgA |
27 | 130 | 13 | 3.586 | < | TcAgTTcAaATca | | tgATtTgAAcTgA |
28 | 100 | 13 | 4.222 | > | gaACtTaCAaAgA | | gaACtTaCAaAgA |
29 | 106 | 13 | 4.732 | < | TgGaCCcAtTTcg | | cgAAaTgGGtCcA |
3 | 113 | 13 | 8.746 | < | GcGtTCcCaTTtc | | gaAAtGgGAaCgC |
30 | 106 | 13 | 7.783 | > | ggAAcTgGAaCtC | | ggAAcTgGAaCtC |
31 | 114 | 13 | 9.641 | < | TtGtTTcAtATtt | | aaATaTgAAaCaA |
32 | 105 | 13 | 10.1 | < | TtGtTCcCaATtt | | aaATtGgGAaCaA |
33 | 111 | 13 | 6.543 | > | tcATtTaGAgCgA | | tcATtTaGAgCgA |
4 | 110 | 13 | 9.043 | > | gaAAgTaGAtCaC | | gaAAgTaGAtCaC |
5 | 108 | 13 | 8.062 | < | CtGcGCtAgTTtt | | aaAAcTaGCgCaG |
6 | 105 | 13 | 6.305 | > | gtAAcTgAAcTaA | | gtAAcTgAAcTaA |
7 | 106 | 13 | 4.097 | < | GtGaCCgAaATat | | atATtTcGGtCaC |
8 | 126 | 13 | 12.56 | < | TcGtTCcAtTTtt | | aaAAaTgGAaCgA |
9 | 101 | 13 | 9.892 | > | aaAAaGaGAgCgA | | aaAAaGaGAgCgA |
The list of sites
1 aaAAcTaGAtCaG
10 atAAtTaGAaCaA
11 aaAAaGaAAaCaG
12 agAAgTgGAcCcA
13 aaAAtTgCAaCaA
14 caATcTgGAcTaG
15 atAAtGaGGgCtA
16 taATcTtGAtAgA
17 acAAcTgGCcAgA
18 aaACcTaAAaAcC
19 aaTAcTcGAaAaA
2 gtAAaGaGAgCaC
20 taAAcTgGAgTaA
21 ttAAgTaGAgCaA
22 ggATcTgGAaCgA
23 cgAAcTaGGtCaC
24 aaAAgTaGAgCgC
25 aaAAcTgCGaTcC
26 aaAAaCgGAcGgA
27 tgATtTgAAcTgA
28 gaACtTaCAaAgA
29 cgAAaTgGGtCcA
3 gaAAtGgGAaCgC
30 ggAAcTgGAaCtC
31 aaATaTgAAaCaA
32 aaATtGgGAaCaA
33 tcATtTaGAgCgA
4 gaAAgTaGAtCaC
5 aaAAcTaGCgCaG
6 gtAAcTgAAcTaA
7 atATtTcGGtCaC
8 aaAAaTgGAaCgA
9 aaAAaGaGAgCgA