The sampler was looking for sites on both strands of 77 sequences of length from 223 through 262.
The site length found is 12.
The sampler has tested the lengths in [6,19].
The motif is formed by 77 motif sites.
All the positions are 0-based.
The description of sitesGene Id | Position | Length | Score | Direction | Site in sequence | | Site-as-in-motif |
1 | 115 | 12 | 6.975 | > | aGcgggAGAGCC | | aGcgggAGAGCC |
10 | 109 | 12 | 9.704 | > | tGagtgAGAGAG | | tGagtgAGAGAG |
11 | 112 | 12 | 10.97 | > | aGaaagAGCGCA | | aGaaagAGCGCA |
12 | 106 | 12 | 5.488 | < | TTCGCTgctaTt | | aAtagcAGCGAA |
13 | 108 | 12 | 7.14 | < | TTCTCTtcaaGt | | aCttgaAGAGAA |
14 | 101 | 12 | 6.372 | < | CTTTCTactcCt | | aGgagtAGAAAG |
15 | 116 | 12 | 10.28 | < | TGCTCTtcctCt | | aGaggaAGAGCA |
16 | 106 | 12 | 1.31 | < | CTTTCTcgaaAc | | gTttcgAGAAAG |
17 | 107 | 12 | 7.749 | > | aGaaaaAGAGTA | | aGaaaaAGAGTA |
18 | 123 | 12 | 12.64 | < | CTCTCTctttCt | | aGaaagAGAGAG |
19 | 120 | 12 | 9.615 | < | CGCTCTcgcaCt | | aGtgcgAGAGCG |
2 | 100 | 12 | 5.965 | > | cGggagAGCCAA | | cGggagAGCCAA |
20 | 115 | 12 | 9.155 | > | cGcgagAGCGAG | | cGcgagAGCGAG |
21 | 101 | 12 | 5.251 | > | aCaaaaATAGCG | | aCaaaaATAGCG |
22 | 107 | 12 | 4.729 | < | CGCGCAcaaaCt | | aGtttgTGCGCG |
23 | 106 | 12 | -1.01 | > | gCcatgAGACAC | | gCcatgAGACAC |
24 | 102 | 12 | 4.053 | < | TTTTTTgtcaCt | | aGtgacAAAAAA |
25 | 109 | 12 | 4.36 | < | GTCTCTtgatTt | | aAatcaAGAGAC |
26 | 120 | 12 | 6.919 | < | CGCACTttttTt | | aAaaaaAGTGCG |
27 | 123 | 12 | 6.926 | > | cGcaaaAGAAAA | | cGcaaaAGAAAA |
28 | 111 | 12 | 12.15 | < | TTCTCTttctCt | | aGagaaAGAGAA |
29 | 115 | 12 | 3.956 | > | aCtgagACTGAG | | aCtgagACTGAG |
3 | 104 | 12 | 8.453 | > | aGggtgAGTGAG | | aGggtgAGTGAG |
30 | 116 | 12 | 5.589 | < | TTCGCTgctcCg | | cGgagcAGCGAA |
31 | 117 | 12 | 4.975 | > | tCggggAGAAAA | | tCggggAGAAAA |
32 | 109 | 12 | 6.447 | > | tCtatgAGAGAA | | tCtatgAGAGAA |
33 | 112 | 12 | 3.718 | < | CGCTCTttgaAg | | cTtcaaAGAGCG |
34 | 106 | 12 | 4.278 | > | aGttgtCGAGCG | | aGttgtCGAGCG |
35 | 108 | 12 | 9.175 | > | aGatggAGCGCA | | aGatggAGCGCA |
36 | 111 | 12 | 5.128 | > | gAgaggAGAGCA | | gAgaggAGAGCA |
37 | 110 | 12 | 1.063 | < | TCCACTctgaAt | | aTtcagAGTGGA |
38 | 107 | 12 | 5.464 | > | aGgtatCGAGCA | | aGgtatCGAGCA |
39 | 112 | 12 | 3.985 | < | CCCGCTcacgCa | | tGcgtgAGCGGG |
4 | 109 | 12 | 9.316 | > | cGagacAGAGCG | | cGagacAGAGCG |
40 | 104 | 12 | 6.671 | > | aAcggcAGAGAA | | aAcggcAGAGAA |
41 | 113 | 12 | 5.776 | < | CGCTCTgaacTt | | aAgttcAGAGCG |
42 | 115 | 12 | 7.394 | > | aGcgcaAGCGAG | | aGcgcaAGCGAG |
43 | 105 | 12 | 7.572 | > | aGgctaAGAGAG | | aGgctaAGAGAG |
44 | 109 | 12 | 7.429 | > | aGggagAGCCAA | | aGggagAGCCAA |
45 | 105 | 12 | 9.701 | > | aGaagaAGAGCA | | aGaagaAGAGCA |
46 | 133 | 12 | 5.998 | < | TGCACTttctGg | | cCagaaAGTGCA |
47 | 121 | 12 | 1.506 | > | tGtctcAGTGCA | | tGtctcAGTGCA |
48 | 114 | 12 | 5.683 | > | aGagtaCGAACG | | aGagtaCGAACG |
49 | 107 | 12 | 11.45 | < | TTTTCTctctCt | | aGagagAGAAAA |
5 | 105 | 12 | 1.824 | > | cAcaacCGCGAG | | cAcaacCGCGAG |
50 | 119 | 12 | 1.551 | > | cAaaatACCGCA | | cAaaatACCGCA |
51 | 105 | 12 | 8.013 | > | aGttttAGAGAG | | aGttttAGAGAG |
52 | 111 | 12 | 4.182 | < | ACCTCTcccaCt | | aGtgggAGAGGT |
53 | 125 | 12 | 7.513 | > | cGagagAGTAAA | | cGagagAGTAAA |
54 | 109 | 12 | 6.522 | > | aAgtagAGCAAA | | aAgtagAGCAAA |
55 | 108 | 12 | 10.54 | < | CTCTCTcactCg | | cGagtgAGAGAG |
56 | 114 | 12 | 7.718 | < | TTCTCTattcGt | | aCgaatAGAGAA |
57 | 127 | 12 | 11.78 | < | TGCTCTctcaCt | | aGtgagAGAGCA |
58 | 113 | 12 | 10.12 | > | cGagagAGCGCG | | cGagagAGCGCG |
59 | 105 | 12 | 5.519 | > | gCgaaaAGAGCG | | gCgaaaAGAGCG |
6 | 120 | 12 | 4.559 | < | TTTGCTaaatCg | | cGatttAGCAAA |
60 | 105 | 12 | 5.443 | < | TTTGCTctgcCg | | cGgcagAGCAAA |
61 | 109 | 12 | 10.69 | > | aGaaacAGAGAG | | aGaaacAGAGAG |
62 | 114 | 12 | 11.55 | < | TGCGCTctctCt | | aGagagAGCGCA |
63 | 113 | 12 | 6.473 | < | CTCTCGttcaTt | | aAtgaaCGAGAG |
64 | 124 | 12 | 5.615 | < | TGCGCAcgctCt | | aGagcgTGCGCA |
65 | 113 | 12 | 11.02 | < | CTCTCTcgctCt | | aGagcgAGAGAG |
66 | 114 | 12 | 11.31 | > | aGttagAGAGAG | | aGttagAGAGAG |
67 | 104 | 12 | 4.914 | > | cCcaagCGAGAG | | cCcaagCGAGAG |
68 | 122 | 12 | 9.768 | > | aGaaagAGCAAG | | aGaaagAGCAAG |
69 | 105 | 12 | 10.65 | > | cGaaagAGAGCA | | cGaaagAGAGCA |
7 | 112 | 12 | 7.453 | < | CTCTCTacctCa | | tGaggtAGAGAG |
70 | 120 | 12 | 8.78 | > | aGagagGGAGAG | | aGagagGGAGAG |
71 | 111 | 12 | 8.806 | < | CGCTCTcgctTt | | aAagcgAGAGCG |
72 | 120 | 12 | 6.732 | < | CGCTCTtacgCa | | tGcgtaAGAGCG |
73 | 118 | 12 | 10.91 | < | CTCTCTctttTt | | aAaaagAGAGAG |
74 | 110 | 12 | 5.716 | > | gCctagAGAGCA | | gCctagAGAGCA |
75 | 107 | 12 | 4.934 | < | TGTTCTtaacTt | | aAgttaAGAACA |
76 | 127 | 12 | -0.04052 | > | aGataaTTCACG | | aGataaTTCACG |
77 | 113 | 12 | 4.119 | < | CTTGCTcaatGa | | tCattgAGCAAG |
8 | 109 | 12 | 13.18 | > | aGagagAGAGAA | | aGagagAGAGAA |
9 | 108 | 12 | 9.73 | > | aCagagAGAAAA | | aCagagAGAAAA |
The list of sites
1 aGcgggAGAGCC
10 tGagtgAGAGAG
11 aGaaagAGCGCA
12 aAtagcAGCGAA
13 aCttgaAGAGAA
14 aGgagtAGAAAG
15 aGaggaAGAGCA
16 gTttcgAGAAAG
17 aGaaaaAGAGTA
18 aGaaagAGAGAG
19 aGtgcgAGAGCG
2 cGggagAGCCAA
20 cGcgagAGCGAG
21 aCaaaaATAGCG
22 aGtttgTGCGCG
23 gCcatgAGACAC
24 aGtgacAAAAAA
25 aAatcaAGAGAC
26 aAaaaaAGTGCG
27 cGcaaaAGAAAA
28 aGagaaAGAGAA
29 aCtgagACTGAG
3 aGggtgAGTGAG
30 cGgagcAGCGAA
31 tCggggAGAAAA
32 tCtatgAGAGAA
33 cTtcaaAGAGCG
34 aGttgtCGAGCG
35 aGatggAGCGCA
36 gAgaggAGAGCA
37 aTtcagAGTGGA
38 aGgtatCGAGCA
39 tGcgtgAGCGGG
4 cGagacAGAGCG
40 aAcggcAGAGAA
41 aAgttcAGAGCG
42 aGcgcaAGCGAG
43 aGgctaAGAGAG
44 aGggagAGCCAA
45 aGaagaAGAGCA
46 cCagaaAGTGCA
47 tGtctcAGTGCA
48 aGagtaCGAACG
49 aGagagAGAAAA
5 cAcaacCGCGAG
50 cAaaatACCGCA
51 aGttttAGAGAG
52 aGtgggAGAGGT
53 cGagagAGTAAA
54 aAgtagAGCAAA
55 cGagtgAGAGAG
56 aCgaatAGAGAA
57 aGtgagAGAGCA
58 cGagagAGCGCG
59 gCgaaaAGAGCG
6 cGatttAGCAAA
60 cGgcagAGCAAA
61 aGaaacAGAGAG
62 aGagagAGCGCA
63 aAtgaaCGAGAG
64 aGagcgTGCGCA
65 aGagcgAGAGAG
66 aGttagAGAGAG
67 cCcaagCGAGAG
68 aGaaagAGCAAG
69 cGaaagAGAGCA
7 tGaggtAGAGAG
70 aGagagGGAGAG
71 aAagcgAGAGCG
72 tGcgtaAGAGCG
73 aAaaagAGAGAG
74 gCctagAGAGCA
75 aAgttaAGAACA
76 aGataaTTCACG
77 tCattgAGCAAG
8 aGagagAGAGAA
9 aCagagAGAAAA