The sampler was looking for sites on both strands of 19 sequences of length from 220 through 242.
The site length found is 11.
The sampler has tested the lengths in [6,16].
The motif is formed by 19 motif sites.
All the positions are 0-based.
The description of sitesGene Id | Position | Length | Score | Direction | Site in sequence | | Site-as-in-motif |
1 | 101 | 11 | 6.051 | < | CAAcGTgcCGG | | CCGgcACgTTG |
10 | 106 | 11 | 5.297 | < | CTCgCCgtCCG | | CGGacGGcGAG |
11 | 105 | 11 | 10.48 | > | CCGacGCgGCG | | CCGacGCgGCG |
12 | 107 | 11 | 8.058 | > | CTGgcGGcGCC | | CTGgcGGcGCC |
13 | 124 | 11 | 7.306 | < | CGCgAAggCGG | | CCGccTTcGCG |
14 | 109 | 11 | 7.071 | > | CTGtcTCgTCT | | CTGtcTCgTCT |
15 | 104 | 11 | 7.123 | > | ATGttGCgGCG | | ATGttGCgGCG |
16 | 121 | 11 | 8.668 | > | CCGgcGCaGCT | | CCGgcGCaGCT |
17 | 112 | 11 | 8.063 | > | CTGgaGCgCCG | | CTGgaGCgCCG |
18 | 110 | 11 | 8.955 | > | CTGtcGCaGCT | | CTGtcGCaGCT |
19 | 103 | 11 | 4.191 | < | CGAgCCtcCCA | | TGGgaGGcTCG |
2 | 110 | 11 | 10.24 | < | CGCgACggCAG | | CTGccGTcGCG |
3 | 113 | 11 | 7.128 | < | CGAcATaaCAG | | CTGttATgTCG |
4 | 109 | 11 | 8.912 | > | CCGacGCaTCG | | CCGacGCaTCG |
5 | 117 | 11 | 9.978 | > | CTGgcACcTCG | | CTGgcACcTCG |
6 | 106 | 11 | 9.675 | > | CTGgcGTtGCG | | CTGgcGTtGCG |
7 | 101 | 11 | 8.893 | > | CCGgaGTcTCG | | CCGgaGTcTCG |
8 | 105 | 11 | 7.829 | > | CGGtgGCgGCG | | CGGtgGCgGCG |
9 | 107 | 11 | 9.759 | > | CTGttGTcGCG | | CTGttGTcGCG |
The list of sites
1 CCGgcACgTTG
10 CGGacGGcGAG
11 CCGacGCgGCG
12 CTGgcGGcGCC
13 CCGccTTcGCG
14 CTGtcTCgTCT
15 ATGttGCgGCG
16 CCGgcGCaGCT
17 CTGgaGCgCCG
18 CTGtcGCaGCT
19 TGGgaGGcTCG
2 CTGccGTcGCG
3 CTGttATgTCG
4 CCGacGCaTCG
5 CTGgcACcTCG
6 CTGgcGTtGCG
7 CCGgaGTcTCG
8 CGGtgGCgGCG
9 CTGttGTcGCG