The sampler has failed by failing all the 3 chains. Initial pattern length was 6.
The sampler was looking for sites on both strands of 12 sequences of length from 221 through 244.
The site length found is 14.
The sampler has tested the lengths in [6,15].
The motif is formed by 12 motif sites.
All the positions are 0-based.
The description of sitesGene Id | Position | Length | Score | Direction | Site in sequence | | Site-as-in-motif |
1 | 113 | 14 | 7.489 | > | CAAcAGATTTTaTA | | CAAcAGATTTTaTA |
10 | 110 | 14 | 8.458 | > | ACAcAGATCGGgAA | | ACAcAGATCGGgAA |
11 | 110 | 14 | 9.852 | < | TTgGCAATATtTAT | | ATAaATATTGCcAA |
12 | 106 | 14 | 6.7 | > | AAGaATAGTGGcAC | | AAGaATAGTGGcAC |
2 | 110 | 14 | 10.71 | < | GTtGCAATCAgCGG | | CCGcTGATTGCaAC |
3 | 103 | 14 | 12.19 | > | AAAgTGATTACaAA | | AAAgTGATTACaAA |
4 | 100 | 14 | 5.82 | < | TAaGTCATCAgTGG | | CCAcTGATGACtTA |
5 | 101 | 14 | 7.735 | > | CAGtTGTTTGCgCA | | CAGtTGTTTGCgCA |
6 | 106 | 14 | 5.248 | < | CTtCCACAAAcTTT | | AAAgTTTGTGGaAG |
7 | 108 | 14 | 12.13 | < | TTtGCAATCTtATT | | AATaAGATTGCaAA |
8 | 103 | 14 | 9.821 | > | CAGcTCATTACgAA | | CAGcTCATTACgAA |
9 | 111 | 14 | 8.952 | < | TTgGCAATAAaATA | | TATtTTATTGCcAA |
The list of sites
1 CAAcAGATTTTaTA
10 ACAcAGATCGGgAA
11 ATAaATATTGCcAA
12 AAGaATAGTGGcAC
2 CCGcTGATTGCaAC
3 AAAgTGATTACaAA
4 CCAcTGATGACtTA
5 CAGtTGTTTGCgCA
6 AAAgTTTGTGGaAG
7 AATaAGATTGCaAA
8 CAGcTCATTACgAA
9 TATtTTATTGCcAA