Kulakovskiy I.V., Favorov A.F., Makeev V.J. (2009) Motif discovery and motif finding from genome-mapped DNase footprint data. Bioinformatics 25(18): 2318-2325.

<up> DMMPMM motif SNA comparison [dmmpmm_compare_html]

motif alignment

Bigfoot
Bergman
Papatsenko
Pollard
SeSiMCMC

motif similarity

Bigfoot Pollard Bergman SeSiMCMC Papatsenko
Bigfoot 1.0 0.4792 0.189 0.0948 0.3772
Pollard 0.4792 1.0 0.2652 0.1613 0.491
Bergman 0.189 0.2652 1.0 0.1064 0.2996
SeSiMCMC 0.0948 0.1613 0.1064 1.0 0.1384
Papatsenko 0.3772 0.491 0.2996 0.1384 1.0