Kulakovskiy I.V., Favorov A.F., Makeev V.J. (2009) Motif discovery and motif finding from genome-mapped DNase footprint data. Bioinformatics 25(18): 2318-2325.

<up> DMMPMM motif SLBO comparison [dmmpmm_compare_html]

motif alignment

Bigfoot
Bergman
Down
Pollard
SeSiMCMC

motif similarity

Bigfoot Pollard Down Bergman SeSiMCMC
Bigfoot 1.0 0.2608 0.0834 0.1192 0.1378
Pollard 0.2608 1.0 0.0401 0.1755 0.1194
Down 0.0834 0.0401 1.0 0.0727 0.0813
Bergman 0.1192 0.1755 0.0727 1.0 0.1165
SeSiMCMC 0.1378 0.1194 0.0813 0.1165 1.0