Kulakovskiy I.V., Favorov A.F., Makeev V.J. (2009) Motif discovery and motif finding from genome-mapped DNase footprint data. Bioinformatics 25(18): 2318-2325.

<up> DMMPMM motif MAD comparison [dmmpmm_compare_html]

motif alignment

Bigfoot
Down
Pollard
SeSiMCMC

motif similarity

Bigfoot Pollard Down SeSiMCMC
Bigfoot 1.0 0.1861 0.4388 0.8715
Pollard 0.1861 1.0 0.2554 0.1779
Down 0.4388 0.2554 1.0 0.4424
SeSiMCMC 0.8715 0.1779 0.4424 1.0