Kulakovskiy I.V., Favorov A.F., Makeev V.J. (2009) Motif discovery and motif finding from genome-mapped DNase footprint data. Bioinformatics 25(18): 2318-2325.

<up> DMMPMM motif BR_Z3 comparison [dmmpmm_compare_html]

motif alignment

Bigfoot
Bergman
Down
Pollard
SeSiMCMC

motif similarity

Bigfoot Pollard Down Bergman SeSiMCMC
Bigfoot 1.0 0.1528 0.1801 0.1858 0.1695
Pollard 0.1528 1.0 0.0895 0.1565 0.0896
Down 0.1801 0.0895 1.0 0.3953 0.4561
Bergman 0.1858 0.1565 0.3953 1.0 0.3151
SeSiMCMC 0.1695 0.0896 0.4561 0.3151 1.0