Kulakovskiy I.V., Favorov A.F., Makeev V.J. (2009) Motif discovery and motif finding from genome-mapped DNase footprint data. Bioinformatics 25(18): 2318-2325.

<up> DMMPMM motif AP comparison [dmmpmm_compare_html]

motif alignment

Bigfoot
Bergman
Down
Noyes_hd
Pollard
SeSiMCMC

motif similarity

Bigfoot Pollard Down Bergman SeSiMCMC Noyes_hd
Bigfoot 1.0 0.6211 0.4553 0.4031 0.6163 0.3779
Pollard 0.6211 1.0 0.3233 0.4953 0.6529 0.3503
Down 0.4553 0.3233 1.0 0.2786 0.3764 0.199
Bergman 0.4031 0.4953 0.2786 1.0 0.4292 0.3769
SeSiMCMC 0.6163 0.6529 0.3764 0.4292 1.0 0.3605
Noyes_hd 0.3779 0.3503 0.199 0.3769 0.3605 1.0