HOmo sapiens transcription factor COmprehensive MOdel COllection contains transcription factor (TF) binding models obtained by careful integration of data from different sources. In the current release (v10) models for 601 human TFs are accompanied by a separate set of models for 396 mouse TFs: new website, old website.
ChIPMunk is a fast heuristic DNA motif digger based a on greedy approach accompanied by bootstrapping. Now classic and dinucleotide versions come in a single updated package, read more.
Straightforward yet Powerful Rapid SuperAlphabet Representation Utilized for motif Search is as practical ChIPMunk companion, read more.
EpiFactors is a database for epigenetic factors, corresponding genes and products,
GenometriCorr is an R package for spatial correlation of genome-wide interval datasets,