diChIPMunk is a dinucleotide offspring of the ChIPMunk, fast heuristic DNA motif digger,
read more.
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MACRO-APE: motif comparison
MAtrix CompaRisOn by Approximate P-value Estimation toolbox allows estimating motif P-values and comparing PWMs using natural Jaccard similarity measure, read more.
ChIPMunk: motif discovery
ChIPMunk is a fast heuristic DNA motif digger based a on greedy approach accompanied by bootstrapping, read more.
GenometriCorr: spatial correlation
GenometriCorr is an R package for spatial correlation of genome-wide interval datasets,
read more.
SeSiMCMC: motif discovery
Sequence Similarities by Marcov Chain Monte Carlo (SeSiMCMC): Yet Another Digging For DNA Motifs Gibbs Sampler, read more.
APSampler: association analysis
APSampler is a tool that allows multi-locus and multi-level association analysis of genotypic and phenotypic data,
read more.