1. HOCOMOCO logo

    HOCOMOCO: motif collection

    HOmo sapiens transcription factor COmprehensive MOdel COllection contains transcription factor (TF) binding models obtained by careful integration of data from different sources. In the current release (v10) models for 601 human TFs are accompanied by a separate set of models for 396 mouse TFs: new website, old website.


    MACRO-PERFECTOS-APE: motif analysis

    MAtrix CompaRisOn and PrEdicting Regulatory Functional Effect by Approximate P-value Estimation toolbox allows estimating motif P-values, comparing PWMs using natural Jaccard similarity measure and motif-based analysis of regulatory SNVs for mono- and dinucleotide PWMs, read more here and there.

  3. new ChIPMunk logo

    ChIPMunk: motif discovery

    ChIPMunk is a fast heuristic DNA motif digger based a on greedy approach accompanied by bootstrapping. Now classic and dinucleotide versions come in a single updated package, read more.

  4. SPRY-SARUS logo

    SPRY-SARUS: motif finding

    Straightforward yet Powerful Rapid SuperAlphabet Representation Utilized for motif Search is as practical ChIPMunk companion, read more.

external links